HL_5J3C_118

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

5J3C|1|XA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_118 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1301

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J3C|1|XA|C|458
5J3C|1|XA|G|460
5J3C|1|XA|A|461
5J3C|1|XA|C|470
5J3C|1|XA|G|471
5J3C|1|XA|A|472
5J3C|1|XA|G|473

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16