HL_5J3C_136

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5J3C|1|XA|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_136 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.2093

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5J3C|1|XA|C|1445
5J3C|1|XA|U|1446
5J3C|1|XA|A|1447
5J3C|1|XA|C|1452
5J3C|1|XA|G|1456
5J3C|1|XA|G|1457

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20