HL_5J3C_138
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5J3C|1|XV|C|16, 5J3C|1|XV|C|17, 5J3C|1|XV|U|17|||A, 5J3C|1|XV|G|18, 5J3C|1|XV|G|19, 5J3C|1|XV|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J3C_138 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1339
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5J3C|1|XV|C|13
5J3C|1|XV|A|14
5J3C|1|XV|G|15
5J3C|1|XV|C|16
5J3C|1|XV|C|17
5J3C|1|XV|U|17|||A
5J3C|1|XV|G|18
5J3C|1|XV|G|19
5J3C|1|XV|U|20
5J3C|1|XV|A|21
5J3C|1|XV|G|22
Current chains
- Chain XV
- P-site tRNA fMet
Nearby chains
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YG
- 50S ribosomal protein L5
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