HL_5J3C_146

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5J3C|1|YA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_146 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0553

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

5J3C|1|YA|G|194
5J3C|1|YA|A|195
5J3C|1|YA|A|196
5J3C|1|YA|A|197
5J3C|1|YA|C|198
5J3C|1|YA|A|199
5J3C|1|YA|U|200
5J3C|1|YA|C|201

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15