3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
5J3C|1|YA|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J3C_189 not in the Motif Atlas
Homologous match to HL_7RQB_049
Geometric discrepancy: 0.053
The information below is about HL_7RQB_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_51824.1
Basepair signature
cWW-F-F-tSH-F-F
Number of instances in this motif group
8

Unit IDs

5J3C|1|YA|G|1949
5J3C|1|YA|G|1950
5J3C|1|YA|U|1951
5J3C|1|YA|A|1952
5J3C|1|YA|A|1953
5J3C|1|YA|G|1954
5J3C|1|YA|U|1955
5J3C|1|YA|U|1956
5J3C|1|YA|C|1957

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XY
Peptide chain release factor 1
Chain YO
50S ribosomal protein L14

Coloring options:


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