HL_5J3C_189

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5J3C|1|YA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_189 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.053

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5J3C|1|YA|G|1949
5J3C|1|YA|G|1950
5J3C|1|YA|U|1951
5J3C|1|YA|A|1952
5J3C|1|YA|A|1953
5J3C|1|YA|G|1954
5J3C|1|YA|U|1955
5J3C|1|YA|U|1956
5J3C|1|YA|C|1957

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XY

Peptide chain release factor 1

Chain YO

50S ribosomal protein L14