HL_5J3C_193
3D structure
- PDB id
- 5J3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.04 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5J3C|1|YA|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J3C_193 not in the Motif Atlas
- Homologous match to HL_4WF9_049
- Geometric discrepancy: 0.0906
- The information below is about HL_4WF9_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5J3C|1|YA|C|2248
5J3C|1|YA|U|2249
5J3C|1|YA|G|2250
5J3C|1|YA|OMG|2251
5J3C|1|YA|G|2252
5J3C|1|YA|G|2253
5J3C|1|YA|C|2254
5J3C|1|YA|G|2255
5J3C|1|YA|G|2256
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- Peptide chain release factor 1
- Chain Y0
- 50S ribosomal protein L27
- Chain YQ
- 50S ribosomal protein L16
Coloring options: