HL_5J4B_028

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUGGCUUAGAAGCAGCCAUC

Length

20 nucleotides

Bulged bases

5J4B|1|1A|A|1113, 5J4B|1|1A|G|1114, 5J4B|1|1A|A|1116

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|1A|G|1105
5J4B|1|1A|U|1106
5J4B|1|1A|G|1108
5J4B|1|1A|G|1109
5J4B|1|1A|C|1110
5J4B|1|1A|U|1111
5J4B|1|1A|U|1112
5J4B|1|1A|A|1113
5J4B|1|1A|G|1114
5J4B|1|1A|A|1115
5J4B|1|1A|A|1116
5J4B|1|1A|G|1117
5J4B|1|1A|C|1118
5J4B|1|1A|A|1119
5J4B|1|1A|G|1120
5J4B|1|1A|C|1121
5J4B|1|1A|C|1122
5J4B|1|1A|A|1123
5J4B|1|1A|U|1124
5J4B|1|1A|C|1125

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains