HL_5J4B_035

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5J4B|1|1A|U|1442, 5J4B|1|1A|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0412

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5J4B|1|1A|G|1435
5J4B|1|1A|U|1436
5J4B|1|1A|U|1437
5J4B|1|1A|A|1438
5J4B|1|1A|A|1439
5J4B|1|1A|U|1440
5J4B|1|1A|A|1441
5J4B|1|1A|U|1442
5J4B|1|1A|U|1443
5J4B|1|1A|C|1444

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23