HL_5J4B_077

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_077 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1092

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5J4B|1|1a|U|296
5J4B|1|1a|G|297
5J4B|1|1a|A|298
5J4B|1|1a|G|299
5J4B|1|1a|A|300
5J4B|1|1a|G|301

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1e

30S ribosomal protein S5

Chain 1q

30S ribosomal protein S17