HL_5J4B_099
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_099 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0757
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5J4B|1|1a|C|1314
5J4B|1|1a|U|1315
5J4B|1|1a|G|1316
5J4B|1|1a|C|1317
5J4B|1|1a|A|1318
5J4B|1|1a|A|1319
5J4B|1|1a|C|1320
5J4B|1|1a|C|1321
5J4B|1|1a|C|1322
5J4B|1|1a|G|1323
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1s
- 30S ribosomal protein S19
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