HL_5J4B_101

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5J4B|1|1a|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_101 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.208

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5J4B|1|1a|C|1445
5J4B|1|1a|U|1446
5J4B|1|1a|A|1447
5J4B|1|1a|C|1452
5J4B|1|1a|G|1456
5J4B|1|1a|G|1457

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20