HL_5J4B_124

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5J4B|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_124 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0497

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5J4B|1|2A|G|382
5J4B|1|2A|U|383
5J4B|1|2A|U|384
5J4B|1|2A|C|385
5J4B|1|2A|G|386
5J4B|1|2A|U|387
5J4B|1|2A|G|388
5J4B|1|2A|G|389
5J4B|1|2A|A|390
5J4B|1|2A|G|391
5J4B|1|2A|C|392

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15