HL_5J4B_138

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

5J4B|1|2A|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|G|882
5J4B|1|2A|G|883
5J4B|1|2A|C|884
5J4B|1|2A|C|885
5J4B|1|2A|C|886
5J4B|1|2A|A|887
5J4B|1|2A|C|888
5J4B|1|2A|C|889
5J4B|1|2A|A|890
5J4B|1|2A|G|892
5J4B|1|2A|C|893
5J4B|1|2A|C|894

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2w

Transfer RNA; tRNA