HL_5J4B_151

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5J4B|1|2A|A|1614, 5J4B|1|2A|A|1616, 5J4B|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_151 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0573

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5J4B|1|2A|C|1612
5J4B|1|2A|G|1613
5J4B|1|2A|A|1614
5J4B|1|2A|C|1615
5J4B|1|2A|A|1616
5J4B|1|2A|C|1617
5J4B|1|2A|A|1618
5J4B|1|2A|G|1619

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22