HL_5J4B_170

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5J4B|1|2A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_170 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0789

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5J4B|1|2A|C|2404
5J4B|1|2A|G|2405
5J4B|1|2A|U|2406
5J4B|1|2A|G|2407
5J4B|1|2A|U|2408
5J4B|1|2A|G|2409
5J4B|1|2A|G|2410
5J4B|1|2A|A|2411
5J4B|1|2A|A|2412
5J4B|1|2A|G|2413

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15