HL_5J4B_210

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

5J4B|1|2a|C|1317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_210 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1805

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J4B|1|2a|C|1314
5J4B|1|2a|U|1315
5J4B|1|2a|G|1316
5J4B|1|2a|C|1317
5J4B|1|2a|A|1318
5J4B|1|2a|A|1319
5J4B|1|2a|C|1320
5J4B|1|2a|C|1321
5J4B|1|2a|C|1322
5J4B|1|2a|G|1323

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19