HL_5J4B_221
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 5J4B|1|2y|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_221 not in the Motif Atlas
- Homologous match to HL_5EL4_222
- Geometric discrepancy: 0.5227
- The information below is about HL_5EL4_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4B|1|2y|G|30
5J4B|1|2y|A|31
5J4B|1|2y|PSU|32
5J4B|1|2y|U|33
5J4B|1|2y|G|34
5J4B|1|2y|A|35
5J4B|1|2y|A|36
5J4B|1|2y|MIA|37
5J4B|1|2y|A|38
5J4B|1|2y|PSU|39
5J4B|1|2y|C|40
Current chains
- Chain 2y
- A-site and E-site tRNAs
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2v
- mRNA
- Chain 2x
- Transfer RNA; tRNA
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