HL_5J4B_235

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

5J4B|1|1A|C|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_235 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.459

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5J4B|1|1A|C|2165
5J4B|1|1A|U|2166
5J4B|1|1A|C|2167
5J4B|1|1A|C|2168
5J4B|1|1A|G|2169
5J4B|1|1A|G|2170

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1k

30S ribosomal protein S11