HL_5J4C_045

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4C_045 not in the Motif Atlas

Homologous match to HL_7RQB_046

Geometric discrepancy: 0.0658

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5J4C|1|1A|C|1837
5J4C|1|1A|G|1838
5J4C|1|1A|U|1839
5J4C|1|1A|A|1840
5J4C|1|1A|A|1841
5J4C|1|1A|G|1842

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1D

50S ribosomal protein L2