HL_5J4C_160

3D structure

PDB id

5J4C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5J4C|1|2A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4C_160 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0672

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5J4C|1|2A|G|1949
5J4C|1|2A|G|1950
5J4C|1|2A|U|1951
5J4C|1|2A|A|1952
5J4C|1|2A|A|1953
5J4C|1|2A|G|1954
5J4C|1|2A|U|1955
5J4C|1|2A|U|1956
5J4C|1|2A|C|1957

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA