HL_5J4D_014

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0765

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5J4D|1|A|G|617
5J4D|1|A|C|618
5J4D|1|A|U|619
5J4D|1|A|C|620
5J4D|1|A|A|621
5J4D|1|A|A|622
5J4D|1|A|C|623

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S4

Chain YA

30S ribosomal protein S16