HL_5J4D_026

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

5J4D|1|A|U|1136, 5J4D|1|A|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_026 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.3231

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5J4D|1|A|G|1133
5J4D|1|A|G|1134
5J4D|1|A|U|1135
5J4D|1|A|U|1136
5J4D|1|A|C|1137
5J4D|1|A|G|1138
5J4D|1|A|G|1139
5J4D|1|A|C|1140
5J4D|1|A|C|1141

Current chains

Chain A

16S ribosomal RNA

Nearby chains