HL_5J4D_053

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

5J4D|1|B|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_053 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.3081

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5J4D|1|B|C|641
5J4D|1|B|G|642
5J4D|1|B|A|643
5J4D|1|B|A|644
5J4D|1|B|C|645
5J4D|1|B|A|646
5J4D|1|B|G|647

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DA

50S ribosomal protein L33

Chain FA

50S ribosomal protein L35

Chain M

50S ribosomal protein L15