HL_5J4D_060

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_060 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.1028

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5J4D|1|B|G|978
5J4D|1|B|G|979
5J4D|1|B|A|980
5J4D|1|B|A|981
5J4D|1|B|C|982
5J4D|1|B|A|983
5J4D|1|B|A|984
5J4D|1|B|C|985

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L30

Chain C

5S ribosomal RNA; 5S rRNA

Chain R

50S ribosomal protein L20