HL_5J4D_064
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_064 not in the Motif Atlas
- Homologous match to HL_9DFE_031
- Geometric discrepancy: 0.082
- The information below is about HL_9DFE_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5J4D|1|B|G|1281
5J4D|1|B|U|1282
5J4D|1|B|G|1283
5J4D|1|B|A|1284
5J4D|1|B|G|1285
5J4D|1|B|A|1286
5J4D|1|B|A|1287
5J4D|1|B|U|1288
5J4D|1|B|C|1289
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
Coloring options: