HL_5J4D_082
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|B|A|2030, 5J4D|1|B|A|2031, 5J4D|1|B|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_082 not in the Motif Atlas
- Homologous match to HL_9DFE_048
- Geometric discrepancy: 0.1033
- The information below is about HL_9DFE_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5J4D|1|B|G|2027
5J4D|1|B|U|2028
5J4D|1|B|G|2029
5J4D|1|B|A|2030
5J4D|1|B|A|2031
5J4D|1|B|G|2032
5J4D|1|B|A|2033
5J4D|1|B|U|2034
5J4D|1|B|G|2035
5J4D|1|B|C|2036
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L3
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