HL_5J4D_091
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_091 not in the Motif Atlas
- Homologous match to HL_9DFE_057
- Geometric discrepancy: 0.1429
- The information below is about HL_9DFE_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|B|C|2404
5J4D|1|B|G|2405
5J4D|1|B|U|2406
5J4D|1|B|G|2407
5J4D|1|B|U|2408
5J4D|1|B|G|2409
5J4D|1|B|G|2410
5J4D|1|B|A|2411
5J4D|1|B|A|2412
5J4D|1|B|G|2413
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L28
Coloring options: