HL_5J4D_092

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_092 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1302

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J4D|1|B|C|2471
5J4D|1|B|G|2472
5J4D|1|B|U|2473
5J4D|1|B|C|2474
5J4D|1|B|C|2475
5J4D|1|B|A|2476
5J4D|1|B|C|2477
5J4D|1|B|A|2478
5J4D|1|B|G|2479

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

50S ribosomal protein L36

Chain I

50S ribosomal protein L6