HL_5J4D_097

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_097 not in the Motif Atlas

Homologous match to HL_9DFE_063

Geometric discrepancy: 0.0672

The information below is about HL_9DFE_063

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

5J4D|1|B|C|2701
5J4D|1|B|U|2702
5J4D|1|B|C|2703
5J4D|1|B|C|2704
5J4D|1|B|A|2705
5J4D|1|B|G|2706

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17