HL_5J4D_104

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

5J4D|1|D|G|18, 5J4D|1|D|G|19, 5J4D|1|D|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_104 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3569

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5J4D|1|D|G|12
5J4D|1|D|C|13
5J4D|1|D|A|14
5J4D|1|D|G|15
5J4D|1|D|C|16
5J4D|1|D|C|17
5J4D|1|D|U|17|||A
5J4D|1|D|G|18
5J4D|1|D|G|19
5J4D|1|D|U|20
5J4D|1|D|A|21
5J4D|1|D|G|22
5J4D|1|D|C|23

Current chains

Chain D

tRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA