HL_5J4D_118

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGGAG

Length

7 nucleotides

Bulged bases

5J4D|1|FB|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_118 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2929

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5J4D|1|FB|C|458
5J4D|1|FB|G|464
5J4D|1|FB|A|465
5J4D|1|FB|G|466
5J4D|1|FB|G|467
5J4D|1|FB|A|468
5J4D|1|FB|G|474

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S16