HL_5J4D_125

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_125 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0662

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5J4D|1|FB|C|862
5J4D|1|FB|U|863
5J4D|1|FB|A|864
5J4D|1|FB|A|865
5J4D|1|FB|C|866
5J4D|1|FB|G|867

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain SC

30S ribosomal protein S5

Chain VC

30S ribosomal protein S8