HL_5J4D_138

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

5J4D|1|FB|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_138 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.083

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5J4D|1|FB|C|1515
5J4D|1|FB|G|1516
5J4D|1|FB|G|1517
5J4D|1|FB|MA6|1518
5J4D|1|FB|MA6|1519
5J4D|1|FB|G|1520

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA