HL_5J4D_144

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5J4D|1|GB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_144 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0701

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J4D|1|GB|G|194
5J4D|1|GB|A|195
5J4D|1|GB|A|196
5J4D|1|GB|A|197
5J4D|1|GB|C|198
5J4D|1|GB|A|199
5J4D|1|GB|U|200
5J4D|1|GB|C|201

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain RB

50S ribosomal protein L15