HL_5J4D_148

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5J4D|1|GB|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_148 not in the Motif Atlas

Homologous match to HL_9DFE_009

Geometric discrepancy: 0.1092

The information below is about HL_9DFE_009

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5J4D|1|GB|U|305
5J4D|1|GB|U|306
5J4D|1|GB|G|307
5J4D|1|GB|G|308
5J4D|1|GB|G|309
5J4D|1|GB|A|310
5J4D|1|GB|A|311
5J4D|1|GB|G|312

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain Z

50S ribosomal protein L29