HL_5J4D_150

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5J4D|1|GB|G|329, 5J4D|1|GB|A|330, 5J4D|1|GB|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_150 not in the Motif Atlas

Homologous match to HL_9DFE_011

Geometric discrepancy: 0.1204

The information below is about HL_9DFE_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

5J4D|1|GB|G|327
5J4D|1|GB|U|328
5J4D|1|GB|G|329
5J4D|1|GB|A|330
5J4D|1|GB|A|331
5J4D|1|GB|A|332
5J4D|1|GB|G|333
5J4D|1|GB|C|334
5J4D|1|GB|C|335

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain LB

50S ribosomal protein L4