HL_5J4D_151

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5J4D|1|GB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_151 not in the Motif Atlas

Geometric match to HL_8VTW_012

Geometric discrepancy: 0.0674

The information below is about HL_8VTW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.6

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J4D|1|GB|G|382
5J4D|1|GB|U|383
5J4D|1|GB|U|384
5J4D|1|GB|C|385
5J4D|1|GB|G|386
5J4D|1|GB|U|387
5J4D|1|GB|G|388
5J4D|1|GB|G|389
5J4D|1|GB|A|390
5J4D|1|GB|G|391
5J4D|1|GB|C|392

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain RB

50S ribosomal protein L15