HL_5J4D_173

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5J4D|1|GB|U|1396, 5J4D|1|GB|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_173 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.0968

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5J4D|1|GB|G|1389
5J4D|1|GB|U|1390
5J4D|1|GB|U|1391
5J4D|1|GB|A|1392
5J4D|1|GB|A|1393
5J4D|1|GB|U|1394
5J4D|1|GB|A|1395
5J4D|1|GB|U|1396
5J4D|1|GB|U|1397
5J4D|1|GB|C|1398

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain ZB

50S ribosomal protein L23