HL_5J4D_180

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5J4D|1|GB|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_180 not in the Motif Atlas

Homologous match to HL_5J7L_175

Geometric discrepancy: 0.0773

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5J4D|1|GB|C|1691
5J4D|1|GB|U|1692
5J4D|1|GB|U|1693
5J4D|1|GB|C|1694
5J4D|1|GB|G|1695
5J4D|1|GB|G|1696

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2