HL_5J4D_190

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5J4D|1|GB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_190 not in the Motif Atlas

Homologous match to HL_9DFE_050

Geometric discrepancy: 0.3794

The information below is about HL_9DFE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

5J4D|1|GB|C|2209
5J4D|1|GB|G|2210
5J4D|1|GB|G|2211
5J4D|1|GB|A|2212
5J4D|1|GB|U|2213
5J4D|1|GB|G|2215

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain JB

50S ribosomal protein L2

Chain OB

50S ribosomal protein L9