HL_5J4D_191

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

5J4D|1|GB|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_191 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.1252

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5J4D|1|GB|C|2248
5J4D|1|GB|U|2249
5J4D|1|GB|G|2250
5J4D|1|GB|OMG|2251
5J4D|1|GB|G|2252
5J4D|1|GB|G|2253
5J4D|1|GB|C|2254
5J4D|1|GB|G|2255
5J4D|1|GB|G|2256

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1

Chain SB

50S ribosomal protein L16