HL_5J4D_194
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_194 not in the Motif Atlas
- Homologous match to HL_9DFE_054
- Geometric discrepancy: 0.0939
- The information below is about HL_9DFE_054
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
5J4D|1|GB|C|2324
5J4D|1|GB|G|2325
5J4D|1|GB|C|2326
5J4D|1|GB|A|2327
5J4D|1|GB|A|2328
5J4D|1|GB|G|2329
5J4D|1|GB|G|2330
5J4D|1|GB|G|2331
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 50S ribosomal protein L27
- Chain MB
- 50S ribosomal protein L5
- Chain NC
- Transfer RNA; tRNA
- Chain SB
- 50S ribosomal protein L16
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