HL_5J4D_208

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

5J4D|1|HB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_208 not in the Motif Atlas

Geometric match to HL_8VTW_069

Geometric discrepancy: 0.0897

The information below is about HL_8VTW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

5J4D|1|HB|C|38
5J4D|1|HB|A|39
5J4D|1|HB|U|40
5J4D|1|HB|U|41
5J4D|1|HB|C|42
5J4D|1|HB|C|43
5J4D|1|HB|G|44

Current chains

Chain HB

5S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain GC

50S ribosomal protein L31

Chain MB

50S ribosomal protein L5

Chain UB

50S ribosomal protein L18