HL_5J4D_216
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5J4D|1|NC|C|16, 5J4D|1|NC|G|18, 5J4D|1|NC|G|19, 5J4D|1|NC|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_216 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1264
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5J4D|1|NC|C|13
5J4D|1|NC|A|14
5J4D|1|NC|G|15
5J4D|1|NC|C|16
5J4D|1|NC|C|17
5J4D|1|NC|U|17|||A
5J4D|1|NC|G|18
5J4D|1|NC|G|19
5J4D|1|NC|U|20
5J4D|1|NC|A|21
5J4D|1|NC|G|22
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain MB
- 50S ribosomal protein L5
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