HL_5J4D_221

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|B|G|882
5J4D|1|B|G|883
5J4D|1|B|C|884
5J4D|1|B|C|885
5J4D|1|B|C|886
5J4D|1|B|A|887
5J4D|1|B|C|888
5J4D|1|B|C|889
5J4D|1|B|A|890
5J4D|1|B|G|892
5J4D|1|B|C|893
5J4D|1|B|C|894

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S19

Chain VA

30S ribosomal protein S13