Loop HL_5J4D

3D structure

PDB id: 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUAC
Length: 51 nucleotides
Bulged bases: 5J4D|1|B|G|2125, 5J4D|1|B|G|2127, 5J4D|1|B|U|2132, 5J4D|1|B|C|2136, 5J4D|1|B|C|2145, 5J4D|1|B|G|2168
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5J4D|1|B|G|2124
5J4D|1|B|G|2125
5J4D|1|B|A|2126
5J4D|1|B|G|2127
5J4D|1|B|C|2128
5J4D|1|B|C|2129
5J4D|1|B|U|2130
5J4D|1|B|G|2131
5J4D|1|B|U|2132
5J4D|1|B|G|2133
5J4D|1|B|A|2134
5J4D|1|B|A|2135
5J4D|1|B|C|2136
5J4D|1|B|C|2137
5J4D|1|B|C|2138
5J4D|1|B|C|2139
5J4D|1|B|C|2140
5J4D|1|B|G|2141
5J4D|1|B|C|2142
5J4D|1|B|C|2143
5J4D|1|B|U|2144
5J4D|1|B|C|2145
5J4D|1|B|C|2146
5J4D|1|B|G|2147
5J4D|1|B|G|2148
5J4D|1|B|G|2149
5J4D|1|B|U|2150
5J4D|1|B|G|2151
5J4D|1|B|G|2152
5J4D|1|B|G|2153
5J4D|1|B|G|2154
5J4D|1|B|G|2155
5J4D|1|B|G|2156
5J4D|1|B|G|2157
5J4D|1|B|A|2158
5J4D|1|B|G|2159
5J4D|1|B|G|2160
5J4D|1|B|C|2161
5J4D|1|B|G|2162
5J4D|1|B|C|2163
5J4D|1|B|C|2164
5J4D|1|B|G|2165
5J4D|1|B|G|2166
5J4D|1|B|U|2167
5J4D|1|B|G|2168
5J4D|1|B|A|2169
5J4D|1|B|A|2170
5J4D|1|B|A|2171
5J4D|1|B|U|2172
5J4D|1|B|A|2173
5J4D|1|B|C|2174

Current chains

Chain B: 25S ribosomal RNA

Nearby chains

Chain D: Transfer RNA; tRNA
Chain TA: 30S ribosomal protein S11

HL_5J4D_223