HL_5J4D_237

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_237 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.0802

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5J4D|1|GB|G|2304
5J4D|1|GB|A|2305
5J4D|1|GB|C|2306
5J4D|1|GB|G|2307
5J4D|1|GB|G|2308
5J4D|1|GB|A|2309
5J4D|1|GB|A|2310
5J4D|1|GB|A|2311
5J4D|1|GB|U|2312

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain MB

50S ribosomal protein L5