HL_5J5B_075

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5J5B|1|CA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_075 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0782

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J5B|1|CA|G|410
5J5B|1|CA|G|411
5J5B|1|CA|A|412
5J5B|1|CA|C|413
5J5B|1|CA|C|414
5J5B|1|CA|A|415
5J5B|1|CA|U|416
5J5B|1|CA|C|417

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein L15