HL_5J5B_127

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_127 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.0692

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5J5B|1|CA|U|2701
5J5B|1|CA|G|2702
5J5B|1|CA|C|2703
5J5B|1|CA|C|2704
5J5B|1|CA|A|2705
5J5B|1|CA|A|2706

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17