HL_5J5B_159

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

5J5B|1|DA|U|958, 5J5B|1|DA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_159 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0465

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|DA|G|954
5J5B|1|DA|PSU|955
5J5B|1|DA|G|956
5J5B|1|DA|C|957
5J5B|1|DA|U|958
5J5B|1|DA|A|959
5J5B|1|DA|A|960
5J5B|1|DA|C|961
5J5B|1|DA|G|962
5J5B|1|DA|U|963

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27